UCSC Cell Browser¶
The UCSC Cell Browser is a fast, lightweight viewer for single-cell data. Cells are presented along with metadata and gene expression, with the ability to color cells by both of these attributes. Additional information, such as cluster marker genes and selected dataset-relevant genes, can also be displayed using the Cell Browser.
There is a UCSC Cell Browser website available at http://cells.ucsc.edu, which includes a handful of datasets from repositories like HCA, CIRM, and GEO as well as user contributed ones. We are happy to add your favorite dataset to this, you will just need to send us the files or a link to where we can download them to firstname.lastname@example.org.
The documentation on this website describes how you can create a Cell Browser for your own data and make it available through your own web server.
To report issues or view the source code, see GitHub.