Bulk downloads

The dataset hierarchy

There is no search API yet but a systematic way to download:: 1) http://cells.ucsc.edu/dataset.json contains the list of top-level datasets in the “datasets” attribute. 2) every object in the “datasets” list is a child dataset, note the “name” attribute. 3) every dataset has a <datasetname>/dataset.json file again, e.g. http://cells.ucsc.edu/adultPancreas/dataset.json 4) datasets with a “datasets” attribute have children themselves, e.g. http://cells.ucsc.edu/xena/dataset.json

Rsync download

If you want to download all or selected datasets, use our rsync server. It is still being tested, please email us for more info.